Publications

Peer-Reviewed Research Articles

20. O’Connor, M. S.; Bragg, Z. T.; Dearworth, J. R.*, Hendrickson, H. P.*
Quantum Mechanics/Molecular Mechanics Calculations Predict A1, Not A2, is Present in Melanopsin (Opn4m) of Red-Eared Slider Turtles (Trachemys Scripta Elegans).
Vision Research, 2023, 209, 108245.

19. Vu, N.; Ali, L.; Chua, T. L.; Barr, D. A.*; Hendrickson, H. P.*; Trivedi, D.*
Computational Insights into Prostaglandin E2 Ligand Binding and Activation of G-Protein-Coupled Receptors
ACS Applied Bio Materials, 2023. https://doi.org/10.1021/acsabm.2c01049

18. Soto, P.; Gloeb, G. M.; Tsuchida, K. A.; Charles, A. A.; Greenwood N. M.; Hendrickson, H.
Insight into the conserved structural dynamics of the C-terminus of mammal PrPC identifies structural core and possible structural role of pharmacological chaperones
Prion, 2023, 17, 55-66.

17. Grace, D. N., Lugos, E. N., Ma, S., Griffith, D. R., Hendrickson, H. P., Woo, J. L., Galloway, M. M.
Brown Carbon Formation Potential of the Biacetyl−Ammonium Sulfate Reaction System
ACS Earth and Space Chemistry  2020, 4, 1104–1113.

16. Grace, D. N., Sharp, J. R., Holappa, R. E., Lugos, E. N., Sebold, M. B., Griffith, D. R., Hendrickson, H. P., Galloway, M. M.
Heterocyclic Product Formation in Aqueous Brown Carbon Systems.
ACS Earth and Space Chemistry 2019, 3, 2472-2481.

15. Negre, C. F. A., Morzan, U. F., Hendrickson, H. P., Pal, R., Lisi, G. P., Loria, J. P., Rivalta, I., Ho, J., Batista, V. S.
Eigenvector centrality for characterization of protein allosteric pathways.
Proceedings of the National Academy of Sciences USA 2018, 115, E12201-E12208.

14. Chaudhuri, S., Hedström, S., Méndez-Hernández, D. D., Hendrickson, H. P., Jung, K. A., Batista, V. S.
Quantitative first-principles predictions of electron transfer rates.
Journal of Chemical Theory and Computation 2017, 13, 6000-6009.

13. Jafari, M., Welden, A. R., Williams, K., Winograd, B., Hendrickson, H. P., Lenard, M., Gottfried, A., Geva, E.
Compute-to-Learn: Authentic Learning via Development of Interactive Computer Demonstrations within a Peer-Led Studio Environment.
Journal of Chemical Education 2017, 94, 1896-1903.

12. Guo, Y., Hendrickson, H. P., Videla, P. E., Chen, Y.-N., Ho, J., Sekharan, S., Batista, V. S., Tully, J. C., Yan, E. C.-Y.
Probing the remarkable thermal kinetics of visual rhodopsin with E181Q and S186A mutants.
The Journal of Chemical Physics  2017, 146, 215104.

11. Sarkar, S., Hendrickson, H. P., Lee, D., DeVine, F., Jung, J., Geva, E., Kim, J., Dunietz, B. D.
Phosphorescence in Bromobenzaldehyde Can Be Enhanced through Intramolecular Heavy Atom Effect.
Journal of Physical Chemistry C 2017, 121, 3771-3777.

10. Lipchock, J. M., Hendrickson, H. P., Douglas, B. B., Bird, K. E., Ginther, P. S., Haynie, S. T., Rivalta, I., Ten, N. S., Batista, V. S., Loria, J. P.
Characterization of PTP1B Inhibition by Chlorogenic Acid and Cichoric Acid.
Biochemistry 2017, 56, 96-106.

9. Schloss, A. C., Liu, W., Williams, D., Kaufman, G., Hendrickson, H. P., Rudshteyn, B., Fu, L., Wang, H., Batista, V. S., Osuji, C., Yan, E. Y.-C., & Reagan, L.
Fabrication of Modularly Functionalizable Microcapsules Using Protein-Based Technologies
ACS Biomaterials Science & Engineering 2016, 2, 1856–1861.

8. Lisi, G. P., Manley, G. A., Hendrickson, H. P., Rivalta, I., Batista, V. S., & Loria, J. P.
Dissecting Dynamic Allosteric Pathways Using Chemically Related Small-Molecule Activators.
Structure 2016, 24, 1155–1166.

7. Zheng, Z., Manna, A., Hendrickson, H. P., Hammer, M., Song, C., Geva, E., & Dunietz, B. D.
Molecular Structure, Spectroscopy and Photo Induced Kinetics in Tri-nuclear Cyanide Bridged Complex in Solution: A First Principle Perspective.
Journal of the American Chemical Society 2014, 136, 16954–16957.

6. Phillips, H., Zheng, Z., Geva, E., & Dunietz, B. D.
Orbital Gap Predictions for Rational Design of Organic Photovoltaic Materials.
Organic Electronics 2014, 15, 1509-1520.

5. Phillips, H., Geva, E., & Dunietz, B. D.
Calculating Off-Site Excitations in Symmetric Donor–Acceptor Systems via Time-Dependent Density Functional Theory with Range-Separated Density Functionals.
Journal of Chemical Theory and Computation 2012, 8, 2661-2668.

4. Zheng, S., Phillips, H., Geva, E., & Dunietz, B. D.
Ab Initio Study of the Emissive Charge-Transfer States of Chromophore-Functionalized Silsesquioxanes.
Journal of the American Chemical Society 2012, 134, 6944-6947.

3. Phillips, H., Zheng, S., Hyla, A., Laine, R., Goodson III, T., Geva, E., & Dunietz, B. D.
Ab Initio Calculation of the Electronic Absorption of Functionalized Octahedral Silsesquioxanes via Time-Dependent Density Functional Theory with Range-Separated Hybrid Functionals.
Journal of Physical Chemistry A 2012, 116, 1137-1145.

2. Phillips, H., Prociuk, A., & Dunietz, B. D.
Bias-Induced Electronic Spectral Effects of Molecular Junctions: A Computational Analysis.
Journal of Chemical Physics 2011, 134, 054708.

1. Prociuk, A., Phillips, H., & Dunietz, B. D.
Modeling Transient Aspects of Coherence-Driven Electron Transport.
Journal of Physics: Conference Series 2010, 220, 012008.

 

Peer-Reviewed Perspectives:

2. Anderson, K.; Arradondo, S.; Ball, K. A.; Bruce, C.; Gomez, M. A.; He, K.; Hendrickson, H.; Madison, L.; McDonald, A. R.; Nagan, M. C.; Scott, C. E.; Soto, P.; Tomlinson, A.; Varner, M.; Parish, C.
The Impacts of the Molecular Education and Research Consortium in Undergraduate Computational Chemistry on the Careers of Women in Computational Chemistry.
Journal of Chemical Information and Modeling 2022, 62, 6316–6322.

1. Ball, A.; He, K.; Hendrickson, H. P.* (Invited)
Engaging Undergraduate Students in Computational Chemistry Research: A Tutorial for New Assistant Professors.
International Journal of Quantum Chemistry, 2020, 120, e26341.

 

Other Invited Perspectives:

2. Lugos, E. N., Gandhi, Z., O’Connor, M. S., Kaplan, E. L., Hendrickson, H. P.
Becoming a Scientist: Engaging the Next Generation of Chemists in Computational Research at a Primarily Undergraduate Institution.
Council on Undergraduate Research (CUR) Chemistry News 4(1), 7-10 (2019).

1. Hendrickson, H. P.
November Research Bio: Dr. Heidi P. Hendrickson.
The Octagon: Newsletter of the Lehigh Valley Section of the American Chemical Society 101(8), 3-4, (2018).

 

Book Chapters:

1. Hendrickson, H. P.*; Lenn, K. M.; Vázquez, F. X.; Williams, K. L.; Winograd, B. A.; Mulvihill, E. A.; Geva, E.
The Compute-to-Learn Pedagogy and Its Implementation in the Chemistry Curriculum. In Teaching Programming across the Chemistry Curriculum; McDonald, A. R., Nash, J. A., Eds.; ACS Symposium Series; American Chemical Society, Vol. 1387; American Chemical Society, 2021; pp 69-87.

 

Book Reviews:

1. Miller, K. F., & Phillips, H.
Book Review: Cultural Foundations of Learning: East and West by Jin Li.
The Journal of Asian Studies 73(01), 199-200 (2014).